Mechanistic insight into the role of AUXIN RESISTANCE4 in trafficking of AUXIN1 and LIKE AUX1-2.

AUXIN RESISTANCE4 (AXR4) regulates the trafficking of auxin influx carrier AUXIN1 (AUX1), a plasma-membrane protein that predominantly localizes to the endoplasmic reticulum (ER) in the absence of AXR4. In Arabidopsis (Arabidopsis thaliana), AUX1 is a member of a small multigene family comprising 4 highly conserved genes-AUX1, LIKE-AUX1 (LAX1), LAX2, and LAX3. We report here that LAX2 also requires AXR4 for correct localization to the plasma membrane. AXR4 is a plant-specific protein and contains a weakly conserved α/ß hydrolase fold domain that is found in several classes of lipid hydrolases and transferases. We have previously proposed that AXR4 may either act as (i) a post-translational modifying enzyme through its α/ß hydrolase fold domain or (ii) an ER accessory protein, which is a special class of ER protein that regulates targeting of their cognate partner proteins. Here, we show that AXR4 is unlikely to act as a post-translational modifying enzyme as mutations in several highly conserved amino acids in the α/ß hydrolase fold domain can be tolerated and active site residues are missing. We also show that AUX1 and AXR4 physically interact with each other and that AXR4 reduces aggregation of AUX1 in a dose-dependent fashion. Our results suggest that AXR4 acts as an ER accessory protein. A better understanding of AXR4-mediated trafficking of auxin transporters in crop plants will be crucial for improving root traits (designer roots) for better acquisition of water and nutrients for sustainable and resilient agriculture.

ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana.

Oxygen is a key signalling component of plant biology, and whilst an oxygen-sensing mechanism was previously described in Arabidopsis thaliana, key features of the associated PLANT CYSTEINE OXIDASE (PCO) N-degron pathway and Group VII ETHYLENE RESPONSE FACTOR (ERFVII) transcription factor substrates remain untested or unknown. We demonstrate that ERFVIIs show non-autonomous activation of root hypoxia tolerance and are essential for root development and survival under oxygen limiting conditions in soil. We determine the combined effects of ERFVIIs in controlling gene expression and define genetic and environmental components required for proteasome-dependent oxygen-regulated stability of ERFVIIs through the PCO N-degron pathway. Using a plant extract, unexpected amino-terminal cysteine sulphonic acid oxidation level of ERFVIIs was observed, suggesting a requirement for additional enzymatic activity within the pathway. Our results provide a holistic understanding of the properties, functions and readouts of this oxygen-sensing mechanism defined through its role in modulating ERFVII stability.

A new species of cirri-bearing eel of the genus Cirrhimuraena (Anguilliformes: Ophichthidae) from the coastal Bay of Bengal, India.

A new species of cirri-bearing ophichthidae eel Cirrhimuraena odishaensis sp. nov. is described here, on the basis of two specimens collected from the Palur canal and Talasari fish landing centre in Odisha, India. The distinguishing characters of Cirrhimuraena odishaensis sp. nov. that separate it from its congeners include the presence of a single row of mandibular teeth, origin of the dorsal fin directly above the midpoint of pectoral fin, vertebral counts (pre-dorsal 10, pre-anal 46-47, and total 160-162), and number of cirri (13) on the upper jaw. Morphologically Cirrhimuraena odishaensis shows close affinity with Cirrhimuraena yuanding and Cirrhimuraena orientalis. The new species differs from C. yuanding by origin of dorsal fin, number of intermaxillary and maxillary teeth, and length of head. The new species differs from C. orientalis with relatively higher vertebrae.

Reutilization of ferro-arsenic waste sludge for the development of concrete blocks through solidification: conservation of natural aggregates with policy suggestion.

In the present study, arsenic sludge and iron sludge extracted from a laboratory scale water treatment plant were aimed to reutilize for the development of concrete blocks. Three different grades (M15, M20 and M25) of concrete blocks were made by blending of arsenic sludge and improved iron sludge (50% sand and 40% iron sludge) in the range of density of 425 to 535 kg/m3 at an optimum ratio of 10:90 (arsenic: iron sludge) followed by mixing of designed quantity cement, coarse aggregates, water and additives. Concrete blocks developed based on this such combination exhibited 26 MPa, 32 MPa and 41 MPa compressive strengths, and 4.68 MPa, 5.92 MPa and 7.78 MPa tensile strengths for M15, M20 and M25, respectively. In comparison with the developed concrete blocks and the blocks made with 10% arsenic sludge and 90% fresh sand, the developed ones (employing 50% sand, 40% iron sludge and 10% arsenic sludge) showed more than 200% higher strength perseverance on average. Successful Toxicity Characteristic Leaching Procedure (TCLP) and compressive strength of the sludge-fixed concrete cubes classified it as a non-hazardous and completely safe to use value-added material. This process involves stabilization of arsenic-rich sludge generated from high-volume long-run laboratory-based arsenic-iron abatement set-up from contaminated water with successful fixation in solid matrix of concrete through complete substitution of natural fine aggregates (river sand) in cement mixture. Techno-economic assessment reveals such concrete block preparation at $0.09 each which is lesser than 1/2 of the present market price of same quality concrete block in India.

Development of concrete blocks by fixation of large-volume arsenic- and iron-rich sludge.10% arsenic sludge with 40% iron sludge showed the highest strength resistance.50% replacement of fresh river-sand without deterioration in strength of concrete blocks.TCLP test confirmed no chances of recontamination through leachate formation. Safe disposal and re-utilization of contaminating wastes for value-added purposes.Developed concrete blocks are lesser than 1/2 cost of the commercially available ones.

Hydraulic flux-responsive hormone redistribution determines root branching.

Plant roots exhibit plasticity in their branching patterns to forage efficiently for heterogeneously distributed resources, such as soil water. The xerobranching response represses lateral root formation when roots lose contact with water. Here, we show that xerobranching is regulated by radial movement of the phloem-derived hormone abscisic acid, which disrupts intercellular communication between inner and outer cell layers through plasmodesmata. Closure of these intercellular pores disrupts the inward movement of the hormone signal auxin, blocking lateral root branching. Once root tips regain contact with moisture, the abscisic acid response rapidly attenuates. Our study reveals how roots adapt their branching pattern to heterogeneous soil water conditions by linking changes in hydraulic flux with dynamic hormone redistribution.

Phosphite treatment can improve root biomass and nutrition use efficiency in wheat.

Phosphite represents a reduced form of phosphate that belongs to a class of crop growth-promoting chemicals termed biostimulants. Previous research has shown that phosphite application can enhance root growth, but its underlying mechanism, especially during environmental stresses, remains elusive. To uncover this, we undertook a series of morphological and physiological analyses under nutrient, water and heat stresses following a foliar application in wheat. Non-invasive 3D imaging of root system architecture directly in soil using X-ray Computed Tomography revealed that phosphite treatment improves root architectural traits and increased root biomass. Biochemical and physiological assays identified that phosphite treatment significantly increases Nitrate Reductase (NR) activity, leaf photosynthesis and stomatal conductance, suggesting improved Nitrogen and Carbon assimilation, respectively. These differences were more pronounced under heat or drought treatment (photosynthesis and photosystem II stability) and nutrient deficiency (root traits and NR). Overall our results suggest that phosphite treatment improves the ability of plants to tolerate abiotic stresses through improved Nitrogen and Carbon assimilation, combined with improved root growth which may improve biomass and yield.

A new congrid eel, Rhynchoconger randalli sp. nov. (Congridae: Anguilliformes), with a pentagonal pattern of vomer dentition from the Bay of Bengal, Indian waters.

A new species Rhynchoconger randalli sp. nov. is described herein on the basis of 2 specimens collected from Paradeep fishing harbor, Odisha, India along the Bay of Bengal from a depth of about 3640 meters. The pentagonal vomerine teeth pattern is unique among all the Rhynchoconger species described to date. The new species is characterized by predorsal vertebrae 78 and preanal vertebrae 2931. The new species closely resembles the recently described Rhynchoconger smithi, but differs in having a larger eye diameter (12.512.9% HL vs. 9.59.7% in R. smithi), smaller interorbital space (13.113.5% HL vs. 15.018.1 in R. smithi), lower dorsal-fin ray count before vent 4447 vs. 5458 in R. smithi, and unique pentagonal vomerine teeth pattern.

Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism.

Root angle in crops represents a key trait for efficient capture of soil resources. Root angle is determined by competing gravitropic versus antigravitropic offset (AGO) mechanisms. Here we report a root angle regulatory gene termed ENHANCED GRAVITROPISM1 (EGT1) that encodes a putative AGO component, whose loss-of-function enhances root gravitropism. Mutations in barley and wheat EGT1 genes confer a striking root phenotype, where every root class adopts a steeper growth angle. EGT1 encodes an F-box and Tubby domain-containing protein that is highly conserved across plant species. Haplotype analysis found that natural allelic variation at the barley EGT1 locus impacts root angle. Gravitropic assays indicated that Hvegt1 roots bend more rapidly than wild-type. Transcript profiling revealed Hvegt1 roots deregulate reactive oxygen species (ROS) homeostasis and cell wall-loosening enzymes and cofactors. ROS imaging shows that Hvegt1 root basal meristem and elongation zone tissues have reduced levels. Atomic force microscopy measurements detected elongating Hvegt1 root cortical cell walls are significantly less stiff than wild-type. In situ analysis identified HvEGT1 is expressed in elongating cortical and stele tissues, which are distinct from known root gravitropic perception and response tissues in the columella and epidermis, respectively. We propose that EGT1 controls root angle by regulating cell wall stiffness in elongating root cortical tissue, counteracting the gravitropic machinery's known ability to bend the root via its outermost tissues. We conclude that root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism.

First report of parasitic isopod Nerocila orbignyi (Cymothoidae) from India with its molecular characterization.

The present report provides the first material evidence of Nerocila orbignyi (Guérin-Méneville, 1832) collected from two different landing centres of the Chilika lagoon, thus claiming the first report of this parasite from India. One of the specimens was recorded from the host fish species Plotosus canius Hamilton 1822, constituting the first host record for this isopod. A key for the identification of N. orbignyi among its congeners is also provided. Molecular characterization of Cytochrome C Oxidase I (COI) gene of N. orbignyi was based on one specimen submitted for the first time to the NCBI database. This parasite is differentiated from the other available sequences of its related congeners retrieved from the NCBI and BOLD database by 26-34% in the Kimura 2 Parameter (K2P) distance and belongs to a separate cluster in Maximum likelihood (ML) tree analysis.

Ariosoma indicum sp. nov., a new species of congrid eel (Anguilliformes: Congridae: Bathymyrinae) from the Indian waters.

Ariosoma indicum sp. nov. is described herein based on 12 specimens [(335-433 mm total length (TL)] collected off the Arabian Sea of southwest coast of India and 7 specimens from Digha Mohana, off the Bay of Bengal of northeast coast of India. The new species is distinguished from congeners in having the following combination of the characters: anus positioned anterior to middle of total length, pre-anal length 40.0%-43.1% of TL; short wedge-shaped pointed vomerine teeth patch, three or four rows in anterior portion, tapering posteriorly with four uniserial teeth; supraorbital canal with four or five pores; pre-dorsal vertebrae 9-10; pre-anal vertebrae 49-53; total vertebrae 141-146; body greenish-brown in colour; extremities of the lower jaw with minute dark pigmentation patches before the rictus, bicoloured pectoral fin. A. indicum shares few characters with the Indian water species, Ariosoma gnanadossi, but readily differs from the latter in having more pre-anal vertebrae (49-53 vs. 47 in A. gnanadossi); fewer lateral-line pores (130-137 vs. 145); shorter tail (54.9%-57.9% TL vs. 60.1% TL); smaller eye (15.1%-17.7% HL vs. 19.2% HL); smaller interorbital width (11.8%-15.7% HL vs. 18.2% HL); longer upper jaw (26.9%-30.2% HL vs. 19.2% HL). In addition, molecular analysis using partial mitochondrial COI gene suggests that A. indicum is genetically closer to Ariosoma maurostigma and Ariosoma melanospilos with a divergence of 15.0% and 15.8%, respectively, and forms a well-supported monophyletic clade.

Out of Africa: characterizing the natural variation in dynamic photosynthetic traits in a diverse population of African rice (Oryza glaberrima).

African rice (Oryza glaberrima) has adapted to challenging environments and is a promising source of genetic variation. We analysed dynamics of photosynthesis and morphology in a reference set of 155 O. glaberrima accessions. Plants were grown in an agronomy glasshouse to late tillering stage. Photosynthesis induction from darkness and the decrease in low light was measured by gas exchange and chlorophyll fluorescence along with root and shoot biomass, stomatal density, and leaf area. Steady-state and kinetic responses were modelled. We describe extensive natural variation in O. glaberrima for steady-state, induction, and reduction responses of photosynthesis that has value for gene discovery and crop improvement. Principal component analyses indicated key clusters of plant biomass, kinetics of photosynthesis (CO2 assimilation, A), and photoprotection induction and reduction (measured by non-photochemical quenching, NPQ), consistent with diverse adaptation. Accessions also clustered according to countries with differing water availability, stomatal conductance (gs), A, and NPQ, indicating that dynamic photosynthesis has adaptive value in O. glaberrima. Kinetics of NPQ, A, and gs showed high correlation with biomass and leaf area. We conclude that dynamic photosynthetic traits and NPQ are important within O. glaberrima, and we highlight NPQ kinetics and NPQ under low light.

Confirmation on the occurrence of Cymothoa indica, and first record of Norileca indica, with a note on new host records of Nerocila arres, and Nerocila depressa (Isopoda: Cymothoidae) from Odisha coast, India.

The parasitic isopod Cymothoa indica Schiöedte and Meinert, 1884 was recorded from the buccal cavity of the host Glossogobius giuris (Hamilton, 1822) collected from Chilka Lake, Odisha in 1924, but its identification was doubtful as mentioned by the author in his book on "Fauna of Chilika Lake: Tanaidacea and Isopoda". The present report of parasitic isopod C. indica from the buccal cavity of the host Sphyraena obtusata Cuvier, 1833 collected from the water of Bay of Bengal, Gopalpur-on-Sea confirms its occurrence along the Odisha coast. The record of the isopod parasite Norileca indica (H. Milne Edwards, 1840) from the branchial cavity of the host Atule mate (Cuvier, 1833) collected from the water of Bay of Bengal, Gopalpur-on-Sea is the first record of this parasite from the coastal water of Odisha, India. The record of Nerocila arres Bowman and Tareen, 1983 from the caudal peduncle of the host fish species Terapon puta Cuvier, 1829, and the isopod N. depressa Milne Edwards, 1840 from the host fish species Megalaspis cordyla (Linnaeus, 1758) are the new host records for these respective parasites.

First record of Lobothorax typus from Odisha coast, India, with molecular characterization and observation of its biphasic moulting.

Two distinct morphologies of Cymothoidae isopod, Lobothorax typus were collected from the marine water of Bay of Bengal, Goapalpur-on-Sea as the first record of this parasite from coastal water of Odisha, India. All specimens were found attached to the buccal region of different individuals of the same host fish Trichiurus lepturus. With the aid of COI gene sequencing and morphological analysis, the individuals were found to be conspecific. The most prominent variation among the two morphologies includes the size of 5th pereonite and pleon length to total body length ratio. These variations are as a result of the biphasic moulting process. Maximum Likelihood tree analysis based on COI gene sequences concluded the monophyletic taxonomy of different buccal attaching genera under the family Cymothoidae which is in congruence with their morphological divergence.

First record of Mothocya renardi and Mothocya collettei (Isopoda: Cymothoidae) from northern part of East Coast of India and new host record of Mothocya collettei.

The present record of different developmental stages of the parasite Mothocya renardi (Bleeker, 1857) and gravid female of Mothocya collettei Bruce, 1986 from different individuals of same host Strongylura leiura (Bleeker, 1850) collected from Bay of Bengal, Gopalpur-on-Sea, Odisha, India are the first record of these parasites from the northern part of east coast of India. The record of Mothocya collettei from the host Strongylura leiura is the first host record for this parasite.

A new species of the genus Cirrhimuraena (Anguilliformes: Ophichthidae) from the Bay of Bengal, India.

A new species of the genus Cirrhimuraena (Anguilliformes: Ophichthidae), Cirrhimuraena indica sp. nov., is described based on eight specimens collected from the Paradip (Odisha) and Petuaghat harbours (West Bengal) along the Bay of Bengal. The species is distinct in having the upper jaw fringed with 16-17 cirri before posterior nostril and 4-5 in between the anterior and posterior nostrils on the side; dorsal fin originates above the level of gill opening, predorsal length is 9.3-10.9 in total length; the head is relatively large, the length is 9.3-9.8 in total length; no infraorbital pores are observed between the nostrils; teeth are numerous, small, conical and in bands on each jaw; pores are present before the gill opening 10-11 and before anus 47-48; pectoral-fin length is 2.4-2.8 in head length; predorsal vertebrae are 8-10, pre-anal vertebrae 43-47 and total vertebrae 164-169. In the maximum likelihood tree analysis for COI gene, the new species belongs to the same clade as the other congener of Cirrhimuraena chinensis and is separated from the species morphologically and genetically.

A new white-spotted moray eel, Gymnothorax aurocephalus sp. nov. (Muraenidae: Muraeninae) from Andaman Sea, India.

Gymnothorax aurocephalus sp. nov. is described herein based on 4 specimens. Three were collected from off Swaraj Dweep Island of Andaman and Nicobar Islands (AN Islands) from a depth of 125-130 m and one specimen off Interview Island, AN Islands at a depth of 90 m. This new species is distinguishable from its congeners by the following combination of characters: chocolate brown color overlain with small irregular white spots, golden skin shadings close to rictus; anus slightly before midbody; pointed and serrated jaw teeth; uniserial teeth in jaws and vomer; vertebral formula 7/61/148-149. The species is compared to all its congeners with white spots.

Arabidopsis antibody resources for functional studies in plants.

Here we report creation of a unique and a very valuable resource for Plant Scientific community worldwide. In this era of post-genomics and modelling of multi-cellular systems using an integrative systems biology approach, better understanding of protein localization at sub-cellular, cellular and tissue levels is likely to result in better understanding of their function and role in cell and tissue dynamics, protein-protein interactions and protein regulatory networks. We have raised 94 antibodies against key Arabidopsis root proteins, using either small peptides or recombinant proteins. The success rate with the peptide antibodies was very low. We show that affinity purification of antibodies massively improved the detection rate. Of 70 protein antibodies, 38 (55%) antibodies could detect a signal with high confidence and 22 of these antibodies are of immunocytochemistry grade. The targets include key proteins involved in hormone synthesis, transport and perception, membrane trafficking related proteins and several sub cellular marker proteins. These antibodies are available from the Nottingham Arabidopsis Stock Centre.

Ophichthus kailashchandrai sp. nov. (Anguilliformes: Ophichthidae): a new species of snake eel from Indian waters, Bay of Bengal.

A new snake eel (Anguilliformes: Ophichthidae: Ophichthinae) species, Ophichthus kailashchandrai sp. nov., is described from three specimens, collected from the Shankarpur fishing harbour located on the northern part of the Bay of Bengal, West Bengal, India. Ophichthus kailashchandrai sp. nov. is distinguished from its congeners by having its dorsal-fin origin at the posterior third of the pectoral fin, preanal length 2.6-2.8 in TL, uniserial maxillary and mandibular teeth and vertebral count (predorsal vertebrae 14-15, preanal vertebrae 54-55, and total vertebrae 180-182).